SNP Profiles of PLAYA ALTA 2 [VEN]   View Data

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_Input profile
AGGGCCAACTTTCCAACTAACCAAGGTT
1._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
2._GC-08-173-4-16
AGGGCCAACTTTCCAACTAACCAAGGTT
3._GC-08-173-4-16
AGGGCCAACTTTCCAACTAACCAAGGTT
4._GC-04-017-1-17
AGGGCCAACTTTCCAACTAACCAAGGTT
5._GC-04-017-1-17
AGGGCCAACTTTCCAACTAACCAAGGTT
6._GC-04-017-1-17
AGGGCCAACTTTCCAACTAACCAAGGTT
7._GC-04-017-1-17
AGGGCCAACTTTCCAACTAACCAAGGTT
8._GC-04-017-1-17
AGGGCCAACTTTCCAACTAACCAAGGTT
9._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
10._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
11._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
12._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
13._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
14._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
15._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
16._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
17._GC-08-173-4-16
AGGGCCAACTTTCCAACTAACCAAGGTT
18._GC-08-173-4-16
AGGGCCAACTTTCCAACTAACCAAGGTT
19._PLAYA_ALTA_2_[VEN]
AGGGCCAACTTTCCAACTAACCAAGGTT
20._PLAYA_ALTA_2_[VEN]
AGGGCCAACT_CCAACTAACCAAGGTT
21._GC-08-173-4-16
AGGGCCAACT_CCAACTAACCAAGGTT
22._RUQ_232
_GG___TT_AA_AA____
23._RUQ_232
AGGGCC__TT__CTAA____
24._RUQ_232
AGCCGGAAAGAA_AAAGAAGGAAGGAA
25._MITC-000367
AGCCGGAAAGAA_AAAGAAGGAAGGAA
 1516171819202122232425262728
_Input profile
CCCGGGGGTTACCCTTCTCCGGGGATCC
1._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
2._GC-08-173-4-16
CCCGGGGGTTACCCTTCTCCGGGGATCC
3._GC-08-173-4-16
CCCGGGGGTTACCCTTCTCCGGGGATCC
4._GC-04-017-1-17
CCCGGGGGTTACCCTTCTCCGGGGATCC
5._GC-04-017-1-17
CCCGGGGGTTACCCTTCTCCGGGGATCC
6._GC-04-017-1-17
CCCGGGGGTTACCCTTCTCCGGGGATCC
7._GC-04-017-1-17
CCCGGGGGTTACCCTTCTCCGGGGATCC
8._GC-04-017-1-17
CCCGGGGGTTACCCTTCTCCGGGGATCC
9._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
10._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
11._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
12._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
13._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
14._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
15._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
16._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
17._GC-08-173-4-16
CCCGGGGGTTACCCTTCTCCGGGGATCC
18._GC-08-173-4-16
CCCGGGGGTTACCCTTCTCCGGGGATCC
19._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
20._PLAYA_ALTA_2_[VEN]
CCCGGGGGTTACCCTTCTCCGGGGATCC
21._GC-08-173-4-16
CCCGGGGGTTACCCTTCTCCGGGGATCC
22._RUQ_232
_CGGGGG_ACCC__CC____
23._RUQ_232
CCCGGG_TTAACCTTCTCCGG_ATCC
24._RUQ_232
GGCGCC_AAACCCAA_CC_GGATGG
25._MITC-000367
GGCGCC_AAACCCAA_CC_GGATGG
 29303132333435       
_Input profile
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
1._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
2._GC-08-173-4-16
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
3._GC-08-173-4-16
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
4._GC-04-017-1-17
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
5._GC-04-017-1-17
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
6._GC-04-017-1-17
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
7._GC-04-017-1-17
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
8._GC-04-017-1-17
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
9._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
10._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
11._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
12._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
13._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
14._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
15._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
16._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
17._GC-08-173-4-16
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
18._GC-08-173-4-16
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
19._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
20._PLAYA_ALTA_2_[VEN]
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
21._GC-08-173-4-16
AGAACTGGCCTTGGX_XX_XX_XX_XX_XX_XX_X
22._RUQ_232
AG___CC__X_XX_XX_XX_XX_XX_XX_X
23._RUQ_232
AGAACTGGCC__X_XX_XX_XX_XX_XX_XX_X
24._RUQ_232
AGAAAGCCCCTTGGX_XX_XX_XX_XX_XX_XX_X
25._MITC-000367
AGAAAGCCCCTTGGX_XX_XX_XX_XX_XX_XX_X

Input profile: PLAYA_ALTA_2_[VEN]

 
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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 8
 Dapeng Zhang, 2016

2._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP4
 Mars, 2018

5._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._PLAYA_ALTA_2_[VEN] GC-04-017-1-17

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 11
 Dapeng Zhang, 2016

10._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 9
 Dapeng Zhang, 2016

11._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 7
 Dapeng Zhang, 2016

12._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 8 > FP
 Dapeng Zhang, 2016

13._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 7
 Dapeng Zhang, 2016

14._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 6
 Dapeng Zhang, 2016

15._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 5
 Dapeng Zhang, 2016

16._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4117 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._PLAYA_ALTA_2_[VEN]

identical
35 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0303
 Dapeng Zhang, 2016

20._PLAYA_ALTA_2_[VEN]

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8416 10
 Dapeng Zhang, 2016

21._PLAYA_ALTA_2_[VEN] GC-08-173-4-16

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._PLAYA_ALTA_2_[VEN] RUQ_232

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

23._PLAYA_ALTA_2_[VEN] RUQ_232

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PLAYA_ALTA_2_[VEN] RUQ_232

54.8 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._PLAYA_ALTA_2_[VEN] MITC-000367

54.8 %
31 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1062 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25